There are a zillion things you can do with it. If you are not proposed this, you can find the updater in the Help > Update Fiji menu item.Ī side note: ImageJ and its plugin are very useful if you are interested in scientific Image Processing. At startup, Fiji should offer you to go to the updater. You will find an executable in the Fiji folder that you just need to run. You then have downloaded the matching Fiji version (fiji-win64-something.zip), and unzipped it in C:\Program Files\ and now have a folder called C:\Program Files\Fiji.app.īefore launching MATLAB, launch Fiji itself. You will not find an installer you just have to unzip the Fiji folder to somewhere convenient for you.įor demonstration purposes, let us assume you have a PC machine that runs a 64-bit version of Windows. Simply go to and download the binaries for your OS.
Fuji imagej software install#
Fortunately, Fiji comes with a script that automates the process.īut you still have to install Fiji. This is not a totally trivial example, as it requires to have the Java libraries for accelerated 3D rendering installed for the MATLAB Java Virtual Machine.
Fuji imagej software how to#
In this demo bundle, we demonstrate how to use Fiji to get a very nice, hardware accelerated, 3D viewer in MATLAB. Since ImageJ is written in Java, it can be called directly from within MATLAB, and be used as a supporting image visualization, processing or analysis tool. It also ships with Miji, a set of utilities made to ease its interaction with MATLAB. For instance, it offers scripting facilities using popular languages such as Python, Ruby, Clojure, Beanshell, Javascript, etc. It has a clever plugin system that allows users to extend it with new functionalities.įiji (Fiji is Just ImageJ, ) is a distribution of ImageJ, that includes (amongst other things) a lot of plugins, some useful libraries and an updater to keep everything up to date.Īmongst other things, it is made to facilitate inter-operability with other softwares. ImageJ is developed mainly by Wayne Rasband, and is written in Java (see ). If you are a master student, a PhD or a postdoc in Biology, there is a very good chance that ImageJ is installed on your computer. ImageJ is an image processing software, very popular in the Life-Science field. How to install Fiji, and make MATLAB aware of it.